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Table 5 Transcripts associated with detoxification function with significantly greater expression in (A.) experienced N. bryanti relative to N. lepida and (B.) experienced N. lepida relative to N. bryanti

From: Evidence for functional convergence in genes upregulated by herbivores ingesting plant secondary compounds

 

Gene ID

Gene Description

Ratio

p-value

A.

Greater expression in experienced N. bryanti

  
  

Phase I - catalyze oxidation, reduction & hydrolysis reactions

  
 

Aldehyde dehydrogenases - oxidize aldehydes

  
 

NM_178713

Aldehyde dehydrogenase 8 family, member A1

2.22

0.010400

 

Alcohol dehydrogenases - oxidize alcohols

  
 

NM_017270

Alcohol dehydrogenase 4 (class II), pi polypeptide

3.03

0.005872

 

NM_017270

Alcohol dehydrogenase 4 (class II), pi polypeptide

2.82

0.005802

 

NM_017270

Alcohol dehydrogenase 4 (class II), pi polypeptide

2.32

0.000857

 

NM_017270

Alcohol dehydrogenase 4 (class II), pi polypeptide

2.26

0.002058

 

Carboxylesterases - hydrolyze carboxylic acid esters

  
 

NM_001190346

Carboxylesterase 2 transcript variant 2, SimilarTo

2.61

0.003223

 

XR_033674

PREDICTED: similar to Carboxylesterase 2

2.28

0.000942

 

NM_001190346

Carboxylesterase 2 transcript variant 2. SimilarTo

2.24

0.002730

 

NM_001190346

Carboxylesterase 2 transcript variant 2. SimilarTo

2.04

0.021685

 

Cytochromes P450 - oxidize wide range of organic substrates

  
 

NM_008898

P450 (cytochrome) oxidoreductase

2.36

0.013012

 

NM_147206

Cytochrome P450, family 3, subfamily a, polypeptide 9

2.18

0.021999

 

NM_147206

Cytochrome P450, family 3, subfamily a, polypeptide 9

2.09

0.023839

 

NM_153312

Cytochrome P450, family 3, subfamily a, polypeptide 23/polypeptide 1

2.08

0.014854

 

Flavin containing monooxygenases - oxidize amines

  
 

NM_008030

Flavin containing monooxygenase 3

2.52

0.004188

 

Superoxide dismutases - dismutase superoxide to oxygen and water

  
 

NM_017050

Superoxide dismutase 1

2.17

0.007301

  

Phase II - catalyze transfer of conjugates to metabolites

  
 

UDP glucuronosyltransferases - transfer glucuronic acid conjugate

  
 

NM_152811

UDP glucuronosyltransferase 2 family, polypeptide B1

26.84

0.000202

 

NM_152811

UDP glucuronosyltransferase 2 family, polypeptide B1

26.2

0.000230

 

NM_153598

UDP glucuronosyltransferase 2 family, polypeptide B34

13.03

0.000721

 

NM_153598

UDP glucuronosyltransferase 2 family, polypeptide B34

10.82

0.001924

 

NM_153598

UDP glucuronosyltransferase 2 family, polypeptide B34

8.52

0.000934

 

NM_152811

UDP glucuronosyltransferase 2 family, polypeptide B1

7.33

0.000471

 

NM_152811

UDP glucuronosyltransferase 2 family, polypeptide B1

7.05

0.001293

 

NM_153598

UDP glucuronosyltransferase 2 family, polypeptide B34

4.58

0.003637

 

NM_173295

UDP glucuronosyltransferase 2 family, polypeptide B17

4.23

0.004670

 

NM_173295

UDP glucuronosyltransferase 2 family, polypeptide B17

4.16

0.004114

 

NM_173295

UDP glucuronosyltransferase 2 family, polypeptide B17

3.82

0.006675

 

NM_153598

UDP glucuronosyltransferase 2 family, polypeptide B34

3.79

0.003846

 

NM_153598

UDP glucuronosyltransferase 2 family, polypeptide B34

3.2

0.000542

 

NM_153598

UDP glucuronosyltransferase 2 family, polypeptide B34

3.13

0.000852

 

NM_001191676

UDP glucuronosyltransferase 2 polypeptide B34, SimilarTo

2.8

0.003254

 

NM_153598

UDP glucuronosyltransferase 2 family, polypeptide B34

2.64

0.001950

 

NM_001191676

UDP glucuronosyltransferase 2 family polypeptide B34

2.52

0.010507

 

NM_201642

UDP glucuronosyltransferase 1 family, polypeptide A6B

2.34

0.009381

 

NM_009467

UDP glucuronosyltransferase 2 family, polypeptide B5

2.23

0.003903

 

NM_201642

UDP glucuronosyltransferase 1 family, polypeptide A6B

2.23

0.005852

 

Glutathione S- transferases - transfer glutathione conjugate

  
 

NM_012796

Glutathione S-transferase, theta 2

5.9

0.002555

 

NM_012796

Glutathione S-transferase, theta 2

4.93

0.003108

 

NM_012796

Glutathione S-transferase, theta 2

4.79

0.003690

 

NM_001024361

Similar to Glutathione S-transferase A1

3.98

0.005397

 

NM_001024361

Similar to Glutathione S-transferase A1

3.58

0.008732

 

NM_001024361

Similar to Glutathione S-transferase A1

3.52

0.005938

 

NM_001024361

Similar to Glutathione S-transferase A1

3.25

0.014456

 

NM_012796

Glutathione S-transferase, theta 2

2.89

0.032248

 

NM_001024361

Similar to Glutathione S-transferase A1

2.66

0.008524

 

NM_001024361

Similar to Glutathione S-transferase A1

2.39

0.010509

 

NM_008183

Glutathione S-transferase, mu 2

2.34

0.047800

 

NM_001009920

Glutathione S-transferase Yc2 subunit

2.32

0.018875

 

NM_001009920

Glutathione S-transferase Yc2 subunit

2.1

0.025697

 

NM_001077353

Glutathione S-transferase, alpha 3, transcript variant 2

2.08

0.048535

 

Methyltransferases - transfer methyl group conjugate

  
 

NM_009349

Indolethylamine N-methyltransferase

10.85

0.000877

 

NM_009349

Indolethylamine N-methyltransferase

8.38

0.002392

 

NM_009349

Indolethylamine N-methyltransferase

6.52

0.009050

 

NM_009349

Indolethylamine N-methyltransferase

6.47

0.007757

 

NM_080462

Histamine N-methyltransferase

2.13

0.004838

 

XM_223974

Methyltransferase 11 domain containing 1

2.04

0.005653

 

NM_172687

Coenzyme Q3 homolog, methyltransferase (yeast)

2.03

0.008959

 

Sulfotransferases - tranfer sulfo group conjugate

  
 

NM_020565

Sulfotransferase family 3A, member 1

4.17

0.006575

 

NM_020565

Sulfotransferase family 3A, member 1

3.81

0.001338

 

NM_020565

Sulfotransferase family 3A, member 1

3.52

0.007965

 

NM_018805

Heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1

3.22

0.001553

 

NM_020565

Sulfotransferase family 3A, member 1

3.2

0.000616

 

NM_020565

Sulfotransferase family 3A, member 1

2.83

0.004497

 

NM_031834

Sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1

2.79

0.001314

 

NM_020565

Sulfotransferase family 3A, member 1

2.77

0.006085

 

NM_018805

Heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1

2.75

0.000909

 

NM_020565

Sulfotransferase family 3A, member 1

2.53

0.000740

 

NM_031834

Sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1

2.26

0.003965

 

NM_031834

Sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1

2.05

0.004712

 

NM_020565

Sulfotransferase family 3A, member 1

2.04

0.024154

B.

Greater expression in experienced N. lepida

  
  

Phase I - catalyze oxidation, reduction & hydrolysis reactions

  
 

Aldehyde dehydrogenases - oxidize aldehydes

  
 

NM_027406

Aldehyde dehydrogenase 1 family, member L1

9.62

0.030847

 

NM_027406

Aldehyde dehydrogenase 1 family, member L1

4.11

0.045209

 

Alcohol dehydrogenases - oxidize alcohols

  
 

NM_007410

Alcohol dehydrogenase 5 (class III), chi polypeptide

2.14

0.025440

 

Cytochromes P450 - oxidize wide range of organic substrates

  
 

NM_028191

Cytochrome P450, family 2, subfamily c, polypeptide 65

8.87

0.017817

 

NM_007820

Cytochrome P450, family 3, subfamily a, polypeptide 16

3.69

0.006413

 

NM_019138

Cytochrome P450, family 7, subfamily b, polypeptide 1

2.68

0.015580

 

NM_007815

Cytochrome P450, family 2, subfamily c, polypeptide 29

2.53

0.028674

 

NM_023025

Cytochrome P450, family 2, subfamily J, polypeptide 4

2.45

0.004241

 

NM_010009

25-hydroxyvitamin D3 1alpha-hydroxylase

2.37

0.030007

  

Phase II - catalyze transfer of conjugates to metabolites

  
 

Glutathione S- transferases - transfer glutathione conjugate

  
 

NM_010358

Glutathione S-transferase, mu 1*

2.99

0.021783

 

NM_010358

Glutathione S-transferase, mu 1*

2.94

0.009552

 

NM_017013

Glutathione S-transferase A2

2.38

0.007870

 

NM_017013

Glutathione S-transferase A2

2.34

0.010162

 

NM_017013

Glutathione S-transferase A2

2.29

0.010172

 

Methyltransferases - transfer methyl group conjugate

  
 

NM_030241

SET domain containing (lysine methyltransferase) 8

2.19

0.001281

 

NM_025907

Methyltransferase like 6

2.05

0.019380

 

NM_016668

Betaine-homocysteine methyltransferase

2.04

0.013408

 

Sulfotransferases - tranfer sulfo group conjugate

  
 

NM_001101534

CDNA clone IMAGE:9053718

2.21

0.007280

 

NM_027928

Carbohydrate (chondroitin 4) sulfotransferase 13, MutualBestHitTo

2.07

0.006258

 

NM_027928

Carbohydrate (chondroitin 4) sulfotransferase 13, MutualBestHitTo

2.04

0.006510

 

NM_027928

Carbohydrate (chondroitin 4) sulfotransferase 13, MutualBestHitTo

2.01

0.009812

  1. Within species, results are organized by major detoxification enzyme classes. Duplicates indicate the response of multiple probes for a given gene.
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BMC Ecology

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