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Table 2 Genes significantly over-expressed in Surprise Lake (SL) sockeye salmon muscle compared to Albert Johnson Creek.

From: Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka)

Function Fold change (Up in SL) P value raw P Value MTC Normalized AJC StdDev AJC Normalized SL StdDev SL Genbank Description
Aerobic infrastructure 2.208 0.002 0.024 0.667 0.465 1.474 1.039 CB510651 72 kDa type IV collagenase precursor
Cell interactions 2.755 0.004 0.033 0.625 0.571 1.720 2.017 CA039936 CD81 antigen
Cell interactions 1.698 0.003 0.028 0.648 0.303 1.100 0.497 CB488646 Cysteine-rich protein 1
Cell interactions 1.543 0.002 0.023 0.777 0.307 1.199 0.377 CB498736 Cysteine-rich protein 1
Cell interactions 2.358 0.003 0.028 0.764 0.687 1.803 1.383 CB515159 Collagen alpha-2(I) chain precursor
DNA 1.610 0.001 0.020 0.789 0.314 1.272 0.425 CA051642 Ribonucleoside-diphosphate reductase M2 subunit
DNA 2.907 0.002 0.024 0.658 0.399 1.910 2.344 CB488712 Structural maintenance of chromosomes protein 1B
DNA 2.252 0.000 0.005 0.706 0.288 1.589 0.805 CB490371 Histone H3.3
Energetic Metabolism 1.825 0.006 0.036 0.836 0.275 1.527 1.051 CA041073 Calcium/calmodulin-dependent protein kinase type II delta chain
Energetic Metabolism 1.508 0.005 0.036 0.792 0.363 1.194 0.376 CA049006 SUMO-activating enzyme subunit 2
Energetic Metabolism 1.534 0.001 0.020 0.703 0.293 1.078 0.280 CA061459 cAMP-dependent protein kinase, beta-2-catalytic subunit
Energetic Metabolism 1.553 0.001 0.020 0.828 0.308 1.286 0.396 CA064428 6-phosphogluconate dehydrogenase, decarboxylating
Energetic Metabolism 1.684 0.003 0.028 0.902 0.325 1.518 0.759 CB498472 Selenide, water dikinase 2
Iron Binding 2.326 0.010 0.044 0.730 0.661 1.697 1.751 CB505886 Ferritin, heavy subunit
Lipid catabolism 1.580 0.004 0.033 0.806 0.271 1.273 0.578 CA038195 Phospholipase A2, acidic 1 precursor
Mitochondria 2.053 0.003 0.028 0.861 0.707 1.766 0.930 CA056742 Carnitine O-palmitoyltransferase 2, mitochondrial precursor
Mitochondria 2.083 0.008 0.039 0.680 0.336 1.416 1.308 CA058136 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
Mitochondria 1.745 0.010 0.044 0.683 0.382 1.192 0.710 CA060285 Adenylate kinase isoenzyme 2, mitochondrial
Mitochondria 1.623 0.005 0.036 0.877 0.354 1.424 0.682 CA062017 Single-stranded DNA-binding protein, mitochondrial precursor
Muscle contraction regulation 2.294 0.007 0.039 0.674 0.486 1.548 1.579 CB509964 Troponin I, slow skeletal muscle
Muscle contraction regulation 1.613 0.010 0.044 0.807 0.386 1.300 0.650 CB510901 Troponin I, slow skeletal muscle
Organelle movement 1.672 0.001 0.020 0.735 0.228 1.230 0.557 CB498105 Tubulin alpha-1C chain
Protein breakdown 1.504 0.005 0.035 0.827 0.409 1.245 0.307 CK990590 Trypsin precursor
Protein breakdown 1.520 0.006 0.037 0.815 0.369 1.238 0.436 CK991067 Cathepsin H precursor
Protein transport 1.575 0.012 0.047 0.836 0.365 1.316 0.662 CA042407 Protein disulfide-isomerase A6 precursor
Protien transport 1.570 0.001 0.020 0.683 0.322 1.072 0.211 CA044589 Protein transport protein Sec61 subunit beta
Sugar binding 1.515 0.008 0.039 0.799 0.309 1.211 0.504 CB505852 serum lectin isoform 3 precursor [Salmo salar]
Transcription (neg) 1.961 0.012 0.047 0.690 0.480 1.352 1.070 CA054647 Selenoprotein K
Transcription regulation 1.592 0.008 0.039 0.739 0.336 1.176 0.540 CB494071 14-3-3-like protein GF14-F
Translation 1.590 0.001 0.020 0.685 0.340 1.088 0.223 CA061402 Pseudouridylate synthase 7 homolog
Translation 1.721 0.000 0.005 0.753 0.242 1.294 0.407 CB516915 Eukaryotic translation initiation factor 3 subunit 7
Transport 2.037 0.003 0.027 0.687 0.444 1.400 0.874 CB496796 Transmembrane emp24 domain-containing protein 3 precursor
Transport 1.880 0.009 0.044 0.704 0.449 1.323 0.920 CB512385 Vacuolar protein sorting-associated protein 41 homolog
Many functions 1.704 0.000 0.002 0.725 0.209 1.235 0.311 CA048664 Protein C-ets-1
Many functions 1.845 0.000 0.010 0.685 0.241 1.264 0.520 CA050496 Transitional endoplasmic reticulum ATPase
Many functions 1.678 0.006 0.037 0.882 0.447 1.479 0.729 CB515873 Dihydropyrimidinase
Other functions 1.855 0.006 0.037 0.858 0.439 1.593 1.058 CA044775 UNKNOWN
Other functions 2.105 0.006 0.037 0.739 0.420 1.556 1.360 CA051433 Transmembrane and ubiquitin-like domain-containing protein 2
Other functions 2.016 0.005 0.035 0.812 0.480 1.638 1.205 CA056436 UNKNOWN
Other functions 1.645 0.000 0.018 0.880 0.292 1.449 0.514 CA056626 Lithognathus mormyrus clone lmos2p08h02 mRNA sequence
Other functions 1.502 0.001 0.020 0.790 0.284 1.187 0.321 CA062511 Translocon-associated protein subunit alpha precursor
Other functions 1.976 0.004 0.033 0.579 0.396 1.144 0.695 CB498745 KH domain-containing, RNA-binding, signal transduction-associated protein 1
Other functions 1.570 0.012 0.049 0.878 0.241 1.379 0.785 CB516580 Kelch-like protein 6
Other functions 1.692 0.004 0.033 0.851 0.335 1.440 0.741 CB516919 Extracellular matrix protein 1 precursor
Unknown 1.536 0.010 0.044 0.838 0.420 1.289 0.512 CA040470 UNKNOWN
Unknown 1.789 0.001 0.020 0.723 0.286 1.294 0.650 CA041684 UNKNOWN
Unknown 1.623 0.007 0.039 0.881 0.511 1.429 0.555 CA054094 UNKNOWN
Unknown 1.656 0.001 0.020 0.747 0.326 1.237 0.420 CA058336 PREDICTED: similar to Transforming growth factor, beta-induced [Danio rerio] >
Unknown 1.563 0.001 0.020 0.629 0.224 0.982 0.332 CA060640 UNKNOWN
Unknown 1.634 0.008 0.039 0.879 0.454 1.437 0.670 CA767983 PREDICTED: similar to small inducible cytokine SCYA105 [Danio rerio]
Unknown 1.534 0.001 0.020 0.863 0.332 1.324 0.362 CB492594 UNKNOWN
Unknown 1.541 0.008 0.039 0.782 0.296 1.204 0.544 CB493987 UNKNOWN
Unknown 1.808 0.004 0.033 0.709 0.484 1.282 0.571 CB502569 UNKNOWN
Unknown 1.575 0.009 0.044 0.855 0.372 1.346 0.640 CB505933 UNKNOWN
Unknown 1.585 0.002 0.024 0.793 0.395 1.257 0.322 CB506647 UNKNOWN
Unknown 1.517 0.010 0.044 1.005 0.575 1.527 0.437 CB515453 UNKNOWN
Unknown 1.543 0.010 0.044 0.758 0.338 1.168 0.517 CB516051 UNKNOWN
Unknown 1.727 0.001 0.020 0.837 0.479 1.445 0.424 CB516202 Sterile alpha motif domain-containing protein 9-like
Unknown 1.570 0.007 0.039 0.828 0.346 1.299 0.578 CK991103 PREDICTED: similar to transposase [Strongylocentrotus purpuratus]
Unknown 1.751 0.000 0.010 0.712 0.280 1.246 0.433 CK991281 UNKNOWN
  1. Genes with significantly greater expression in Surprise Lake sockeye salmon muscle compared to Albert Johnson Creek (AJC) sockeye salmon muscle. We present the gene description, the raw P values, the multiple test corrected P values, the average normalized expression values and standard deviations for each population, the Genbank ID and gene description.