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Table 1 Genes significantly over-expressed in Albert Johnson Creek (AJC) sockeye salmon muscle compared to Surprise Lake (SL)

From: Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka)

Function Fold Change (Up in AJC) P Value Raw P Value MTC Normalized AJC StdDev AJC Normalized SL StdDev SL Genbank Description
Cell division 1.518 0.003 0.033 1.160 0.447 0.765 0.261 CA059189 Golgi reassembly-stacking protein 2
Cell division 1.678 0.008 0.043 1.504 0.936 0.896 0.389 CA060603 Katanin p80 WD40-containing subunit B1
Cell division 1.778 0.011 0.044 1.592 0.849 0.895 0.593 CB515443 Nuclear autoantigenic sperm protein
Cell structure 2.118 0.003 0.033 1.422 1.252 0.671 0.361 CB510619 Oncorhynchus mykiss mRNA for type II keratin E1 (E1 gene)
Development 1.644 0.002 0.033 1.162 0.439 0.707 0.297 CA052389 Plexin-A3 precursor
Development 1.755 0.004 0.036 1.122 0.516 0.639 0.354 CB498195 Reticulon-4
DNA Replication 1.738 0.007 0.042 1.107 0.631 0.637 0.335 CA053921 Girdin
DNA Replication 1.722 0.003 0.033 1.535 0.863 0.892 0.375 CB494447 Poly [ADP-ribose] polymerase 14
Energetic Metabolism 1.601 0.014 0.050 1.287 0.662 0.804 0.413 CA042459 Salmo salar Na, K-ATPase alpha subunit isoform 1b/ii (ATP1A1B/ii)
Energetic Metabolism 1.796 0.013 0.048 1.262 0.885 0.703 0.436 CA064415 Methionine-R-sulfoxide reductase
Energetic Metabolism 1.685 0.007 0.042 1.552 0.764 0.921 0.482 CB503498 Creatine kinase, testis isozyme
Immune 1.597 0.009 0.044 1.182 0.732 0.740 0.256 CA048654 Oncorhynchus mykiss SYPG1 MHCII-alpha and Raftlin-like pseudogenes
Immune 1.893 0.002 0.033 1.293 0.663 0.683 0.392 CA063034 Transient receptor potential cation channel subfamily M member 4
Immune 1.722 0.003 0.033 1.096 0.548 0.636 0.293 CB492871 Oncorhynchus mykiss mRNA for MHC class II alpha (onmy-DAA*02 gene)
Iron Binding 1.540 0.012 0.046 1.134 0.400 0.736 0.372 CB494485 Ferritin, heavy subunit
Iron Binding 1.657 0.004 0.033 0.981 0.449 0.592 0.263 CB501208 Hemoglobin subunit alpha-4
Mitochondria 1.873 0.007 0.043 1.428 0.953 0.763 0.472 CB489874 TIM21-like protein, mitochondrial precursor
Mitochondria 1.528 0.001 0.033 1.092 0.365 0.714 0.217 CB498084 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4
Protein folding 1.644 0.006 0.041 1.210 0.548 0.736 0.359 CA052325 Prefoldin subunit 2
Protein transport 1.911 0.003 0.044 1.095 0.697 0.573 0.284 CA051435 Ras-related protein Rab-14
Protein transport 1.674 0.006 0.041 1.237 0.702 0.739 0.323 CA054426 ADP-ribosylation factor 1
Protein transport 2.103 0.001 0.033 1.263 0.669 0.600 0.366 CB491150 Kinesin-like protein KIF20A
Signal 1.544 0.003 0.033 1.174 0.510 0.760 0.235 CB514723 G-protein coupled receptor APJ homolog
Transcription factor (neg) 1.652 0.011 0.044 1.301 0.489 0.787 0.479 CB499801 Pre-B-cell leukemia transcription factor 2
Transcription regulation 1.974 0.009 0.044 1.335 1.062 0.676 0.460 CA050914 CCAAT/enhancer-binding protein delta
Transcription regulation 1.903 0.002 0.033 1.210 0.667 0.636 0.348 CB498272 Nucleolar protein 5A
Translation 1.518 0.001 0.033 1.067 0.301 0.703 0.217 CA037622 60S ribosomal protein L36
Translation 1.967 0.003 0.033 1.196 0.714 0.608 0.381 CA045500 60S ribosomal protein L9
Translation 1.528 0.001 0.033 1.297 0.504 0.849 0.226 CA055741 60S ribosomal protein L9
Translation 1.613 0.001 0.033 1.252 0.544 0.776 0.250 CA770261 60S ribosomal protein L23
Translation 1.538 0.013 0.048 0.944 0.433 0.614 0.285 CA770402 60S ribosomal protein L15
Translation 1.538 0.007 0.042 1.069 0.256 0.695 0.336 CB493600 40S ribosomal protein S30
Translation 1.711 0.002 0.033 1.377 0.739 0.805 0.306 CB493907 40S ribosomal protein S19
Translation 1.632 0.006 0.040 1.137 0.434 0.697 0.352 CB503205 60S ribosomal protein L4-B
Translation 1.719 0.009 0.044 0.908 0.529 0.528 0.289 CB514402 60S ribosomal protein L19
Translation 1.717 0.014 0.050 1.555 1.267 0.905 0.376 CK990280 60S acidic ribosomal protein P1
Transmembrane 1.536 0.006 0.042 1.285 0.591 0.836 0.310 CA041663 pfam07690, MFS_1, Major Facilitator Superfamily
Many functions 1.526 0.002 0.033 1.206 0.366 0.791 0.296 CA047582 Somatotropin precursor
Many functions 1.502 0.011 0.044 1.125 0.407 0.749 0.338 CA052412 Ectodysplasin-A
Many functions 1.630 0.010 0.044 1.154 0.613 0.708 0.350 CA061568 Nucleophosmin
Many functions 1.695 0.014 0.050 1.326 0.799 0.782 0.451 CB503191 Anterior gradient protein 2 homolog precurser
Many functions 1.614 0.011 0.044 1.147 0.668 0.711 0.309 CB515428 Tartrate-resistant acid phosphatase type 5 precursor
Other functions 1.762 0.003 0.033 1.234 0.769 0.701 0.287 CA044554 Prothymosin alpha
Other functions 1.677 0.004 0.033 1.283 0.734 0.765 0.290 CA055729 Transmembrane protein 178 precursor
Other functions 1.507 0.010 0.044 1.002 0.406 0.665 0.286 CA058231 Antolefinin
Other functions 1.518 0.006 0.041 1.141 0.647 0.752 0.128 CA059713 Probable RNA-directed DNA polymerase from transposon BS
Other functions 1.842 0.011 0.044 1.594 0.965 0.865 0.599 CB490454 Zona pellucida sperm-binding protein 3 precursor
Other functions 1.630 0.003 0.033 1.401 0.569 0.860 0.369 CB492596 Proteasome subunit alpha type 4
Other functions 1.614 0.008 0.044 1.164 0.582 0.721 0.333 CB494074 Oncorhynchus mykiss clone Glan 1 transposon e
Other functions 1.574 0.012 0.046 1.333 0.796 0.847 0.323 CB497649 Nucleoside diphosphate kinase B
Other functions 1.528 0.012 0.046 1.212 0.637 0.793 0.301 CB498610 UNKNOWN
Other functions 1.640 0.003 0.033 1.289 0.622 0.786 0.305 CB499656 Dual specificity mitogen-activated protein kinase kinase 6
Other functions 1.775 0.005 0.040 1.266 0.692 0.713 0.389 CB511161 Voltage-dependent anion-selective channel protein 2
Other functions 1.752 0.007 0.043 1.073 0.533 0.613 0.365 CB511880 Serine/threonine-protein kinase Haspin
Other functions 1.513 0.001 0.033 1.061 0.316 0.701 0.221 CB514112 Serine/threonine/tyrosine-interacting protein
Other functions 1.536 0.005 0.038 1.238 0.600 0.806 0.250 CB514435 Williams-Beuren syndrome chromosome region 16 protein homolog
Unknown 1.657 0.011 0.044 1.156 0.416 0.698 0.430 CA039908 UNKNOWN
Unknown 1.538 0.002 0.033 1.402 0.577 0.912 0.258 CA039963 UNKNOWN
Unknown 1.765 0.001 0.033 1.627 0.789 0.921 0.367 CA040487 PREDICTED: similar to Keratin-associated protein 10-1
Unknown 1.674 0.010 0.044 1.113 0.748 0.665 0.284 CA041505 UNKNOWN
Unknown 1.607 0.003 0.033 1.212 0.436 0.754 0.338 CA050842 UNKNOWN
Unknown 1.715 0.005 0.040 1.368 0.802 0.798 0.361 CA051475 UNKNOWN
Unknown 1.723 0.003 0.033 1.307 0.686 0.758 0.326 CA054597 UNKNOWN
Unknown 1.565 0.003 0.033 1.001 0.430 0.639 0.218 CA057262 PREDICTED: similar to Rsbn1 protein [Danio rerio]
Unknown 1.872 0.000 0.033 1.204 0.261 0.643 0.321 CA058259 UNKNOWN
Unknown 1.537 0.011 0.044 1.350 0.696 0.878 0.346 CA058522 UNKNOWN
Unknown 1.698 0.004 0.033 0.956 0.321 0.563 0.304 CA061924 UNKNOWN
Unknown 1.891 0.012 0.047 1.581 1.414 0.836 0.484 CB490094 UNKNOWN
Unknown 1.558 0.005 0.040 1.143 0.493 0.734 0.294 CB492336 UNKNOWN
Unknown 1.634 0.001 0.033 1.291 0.479 0.790 0.280 CB492905 UNKNOWN
Unknown 1.660 0.008 0.044 1.254 0.653 0.755 0.380 CB494690 UNKNOWN
Unknown 1.695 0.001 0.033 1.297 0.534 0.765 0.281 CB497128 UNKNOWN
Unknown 1.816 0.009 0.044 1.431 0.997 0.788 0.448 CB500083 UNKNOWN
Unknown 1.730 0.010 0.044 1.218 0.459 0.704 0.476 CB509719 PREDICTED: similar to CC chemokine SCYA103 [Danio rerio]
Unknown 1.693 0.010 0.044 1.243 0.634 0.734 0.417 CB510709 UNKNOWN
Unknown 1.626 0.002 0.033 1.366 0.590 0.840 0.317 CB511393 UNKNOWN
Unknown 1.603 0.008 0.043 1.193 0.606 0.744 0.327 CB511789 PREDICTED: similar to Protein C14orf159, mitochondrial precursor
Unknown 1.619 0.013 0.047 1.195 0.818 0.738 0.271 CB513822 UNKNOWN
Unknown 1.604 0.011 0.044 1.273 0.687 0.794 0.367 CB514071 UNKNOWN
Unknown 1.605 0.009 0.044 1.069 0.625 0.666 0.263 CK990538 UNKNOWN
Unknown 1.501 0.008 0.043 1.158 0.590 0.772 0.227 CK991114 UNKNOWN
  1. Genes with significantly greater expression in Albert Johnson Creek (AJC) sockeye salmon muscle compared to Surprise Lake (SL) sockeye salmon muscle. We present the gene description, the raw P values, the multiple test corrected P values, the average normalized expression values and standard deviations for each population, the Genbank ID and gene description.