Table 1 Genes significantly over-expressed in Albert Johnson Creek (AJC) sockeye salmon muscle compared to Surprise Lake (SL)

Cell division

1.518

0.003

0.033

1.160

0.447

0.765

0.261

CA059189

Golgi reassembly-stacking protein 2

Cell division

1.678

0.008

0.043

1.504

0.936

0.896

0.389

CA060603

Katanin p80 WD40-containing subunit B1

Cell division

1.778

0.011

0.044

1.592

0.849

0.895

0.593

CB515443

Nuclear autoantigenic sperm protein

Cell structure

2.118

0.003

0.033

1.422

1.252

0.671

0.361

CB510619

Oncorhynchus mykiss mRNA for type II keratin E1 (E1 gene)

Development

1.644

0.002

0.033

1.162

0.439

0.707

0.297

CA052389

Plexin-A3 precursor

Development

1.755

0.004

0.036

1.122

0.516

0.639

0.354

CB498195

Reticulon-4

DNA Replication

1.738

0.007

0.042

1.107

0.631

0.637

0.335

CA053921

Girdin

DNA Replication

1.722

0.003

0.033

1.535

0.863

0.892

0.375

CB494447

Poly [ADP-ribose] polymerase 14

Energetic Metabolism

1.601

0.014

0.050

1.287

0.662

0.804

0.413

CA042459

Salmo salar Na, K-ATPase alpha subunit isoform 1b/ii (ATP1A1B/ii)

Energetic Metabolism

1.796

0.013

0.048

1.262

0.885

0.703

0.436

CA064415

Methionine-R-sulfoxide reductase

Energetic Metabolism

1.685

0.007

0.042

1.552

0.764

0.921

0.482

CB503498

Creatine kinase, testis isozyme

Immune

1.597

0.009

0.044

1.182

0.732

0.740

0.256

CA048654

Oncorhynchus mykiss SYPG1 MHCII-alpha and Raftlin-like pseudogenes

Immune

1.893

0.002

0.033

1.293

0.663

0.683

0.392

CA063034

Transient receptor potential cation channel subfamily M member 4

Immune

1.722

0.003

0.033

1.096

0.548

0.636

0.293

CB492871

Oncorhynchus mykiss mRNA for MHC class II alpha (onmy-DAA*02 gene)

Iron Binding

1.540

0.012

0.046

1.134

0.400

0.736

0.372

CB494485

Ferritin, heavy subunit

Iron Binding

1.657

0.004

0.033

0.981

0.449

0.592

0.263

CB501208

Hemoglobin subunit alpha-4

Mitochondria

1.873

0.007

0.043

1.428

0.953

0.763

0.472

CB489874

TIM21-like protein, mitochondrial precursor

Mitochondria

1.528

0.001

0.033

1.092

0.365

0.714

0.217

CB498084

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4

Protein folding

1.644

0.006

0.041

1.210

0.548

0.736

0.359

CA052325

Prefoldin subunit 2

Protein transport

1.911

0.003

0.044

1.095

0.697

0.573

0.284

CA051435

Ras-related protein Rab-14

Protein transport

1.674

0.006

0.041

1.237

0.702

0.739

0.323

CA054426

ADP-ribosylation factor 1

Protein transport

2.103

0.001

0.033

1.263

0.669

0.600

0.366

CB491150

Kinesin-like protein KIF20A

Signal

1.544

0.003

0.033

1.174

0.510

0.760

0.235

CB514723

G-protein coupled receptor APJ homolog

Transcription factor (neg)

1.652

0.011

0.044

1.301

0.489

0.787

0.479

CB499801

Pre-B-cell leukemia transcription factor 2

Transcription regulation

1.974

0.009

0.044

1.335

1.062

0.676

0.460

CA050914

CCAAT/enhancer-binding protein delta

Transcription regulation

1.903

0.002

0.033

1.210

0.667

0.636

0.348

CB498272

Nucleolar protein 5A

Translation

1.518

0.001

0.033

1.067

0.301

0.703

0.217

CA037622

60S ribosomal protein L36

Translation

1.967

0.003

0.033

1.196

0.714

0.608

0.381

CA045500

60S ribosomal protein L9

Translation

1.528

0.001

0.033

1.297

0.504

0.849

0.226

CA055741

60S ribosomal protein L9

Translation

1.613

0.001

0.033

1.252

0.544

0.776

0.250

CA770261

60S ribosomal protein L23

Translation

1.538

0.013

0.048

0.944

0.433

0.614

0.285

CA770402

60S ribosomal protein L15

Translation

1.538

0.007

0.042

1.069

0.256

0.695

0.336

CB493600

40S ribosomal protein S30

Translation

1.711

0.002

0.033

1.377

0.739

0.805

0.306

CB493907

40S ribosomal protein S19

Translation

1.632

0.006

0.040

1.137

0.434

0.697

0.352

CB503205

60S ribosomal protein L4-B

Translation

1.719

0.009

0.044

0.908

0.529

0.528

0.289

CB514402

60S ribosomal protein L19

Translation

1.717

0.014

0.050

1.555

1.267

0.905

0.376

CK990280

60S acidic ribosomal protein P1

Transmembrane

1.536

0.006

0.042

1.285

0.591

0.836

0.310

CA041663

pfam07690, MFS_1, Major Facilitator Superfamily

Many functions

1.526

0.002

0.033

1.206

0.366

0.791

0.296

CA047582

Somatotropin precursor

Many functions

1.502

0.011

0.044

1.125

0.407

0.749

0.338

CA052412

Ectodysplasin-A

Many functions

1.630

0.010

0.044

1.154

0.613

0.708

0.350

CA061568

Nucleophosmin

Many functions

1.695

0.014

0.050

1.326

0.799

0.782

0.451

CB503191

Anterior gradient protein 2 homolog precurser

Many functions

1.614

0.011

0.044

1.147

0.668

0.711

0.309

CB515428

Tartrate-resistant acid phosphatase type 5 precursor

Other functions

1.762

0.003

0.033

1.234

0.769

0.701

0.287

CA044554

Prothymosin alpha

Other functions

1.677

0.004

0.033

1.283

0.734

0.765

0.290

CA055729

Transmembrane protein 178 precursor

Other functions

1.507

0.010

0.044

1.002

0.406

0.665

0.286

CA058231

Antolefinin

Other functions

1.518

0.006

0.041

1.141

0.647

0.752

0.128

CA059713

Probable RNA-directed DNA polymerase from transposon BS

Other functions

1.842

0.011

0.044

1.594

0.965

0.865

0.599

CB490454

Zona pellucida sperm-binding protein 3 precursor

Other functions

1.630

0.003

0.033

1.401

0.569

0.860

0.369

CB492596

Proteasome subunit alpha type 4

Other functions

1.614

0.008

0.044

1.164

0.582

0.721

0.333

CB494074

Oncorhynchus mykiss clone Glan 1 transposon e

Other functions

1.574

0.012

0.046

1.333

0.796

0.847

0.323

CB497649

Nucleoside diphosphate kinase B

Other functions

1.528

0.012

0.046

1.212

0.637

0.793

0.301

CB498610

UNKNOWN

Other functions

1.640

0.003

0.033

1.289

0.622

0.786

0.305

CB499656

Dual specificity mitogen-activated protein kinase kinase 6

Other functions

1.775

0.005

0.040

1.266

0.692

0.713

0.389

CB511161

Voltage-dependent anion-selective channel protein 2

Other functions

1.752

0.007

0.043

1.073

0.533

0.613

0.365

CB511880

Serine/threonine-protein kinase Haspin

Other functions

1.513

0.001

0.033

1.061

0.316

0.701

0.221

CB514112

Serine/threonine/tyrosine-interacting protein

Other functions

1.536

0.005

0.038

1.238

0.600

0.806

0.250

CB514435

Williams-Beuren syndrome chromosome region 16 protein homolog

Unknown

1.657

0.011

0.044

1.156

0.416

0.698

0.430

CA039908

UNKNOWN

Unknown

1.538

0.002

0.033

1.402

0.577

0.912

0.258

CA039963

UNKNOWN

Unknown

1.765

0.001

0.033

1.627

0.789

0.921

0.367

CA040487

PREDICTED: similar to Keratin-associated protein 10-1

Unknown

1.674

0.010

0.044

1.113

0.748

0.665

0.284

CA041505

UNKNOWN

Unknown

1.607

0.003

0.033

1.212

0.436

0.754

0.338

CA050842

UNKNOWN

Unknown

1.715

0.005

0.040

1.368

0.802

0.798

0.361

CA051475

UNKNOWN

Unknown

1.723

0.003

0.033

1.307

0.686

0.758

0.326

CA054597

UNKNOWN

Unknown

1.565

0.003

0.033

1.001

0.430

0.639

0.218

CA057262

PREDICTED: similar to Rsbn1 protein [Danio rerio]

Unknown

1.872

0.000

0.033

1.204

0.261

0.643

0.321

CA058259

UNKNOWN

Unknown

1.537

0.011

0.044

1.350

0.696

0.878

0.346

CA058522

UNKNOWN

Unknown

1.698

0.004

0.033

0.956

0.321

0.563

0.304

CA061924

UNKNOWN

Unknown

1.891

0.012

0.047

1.581

1.414

0.836

0.484

CB490094

UNKNOWN

Unknown

1.558

0.005

0.040

1.143

0.493

0.734

0.294

CB492336

UNKNOWN

Unknown

1.634

0.001

0.033

1.291

0.479

0.790

0.280

CB492905

UNKNOWN

Unknown

1.660

0.008

0.044

1.254

0.653

0.755

0.380

CB494690

UNKNOWN

Unknown

1.695

0.001

0.033

1.297

0.534

0.765

0.281

CB497128

UNKNOWN

Unknown

1.816

0.009

0.044

1.431

0.997

0.788

0.448

CB500083

UNKNOWN

Unknown

1.730

0.010

0.044

1.218

0.459

0.704

0.476

CB509719

PREDICTED: similar to CC chemokine SCYA103 [Danio rerio]

Unknown

1.693

0.010

0.044

1.243

0.634

0.734

0.417

CB510709

UNKNOWN

Unknown

1.626

0.002

0.033

1.366

0.590

0.840

0.317

CB511393

UNKNOWN

Unknown

1.603

0.008

0.043

1.193

0.606

0.744

0.327

CB511789

PREDICTED: similar to Protein C14orf159, mitochondrial precursor

Unknown

1.619

0.013

0.047

1.195

0.818

0.738

0.271

CB513822

UNKNOWN

Unknown

1.604

0.011

0.044

1.273

0.687

0.794

0.367

CB514071

UNKNOWN

Unknown

1.605

0.009

0.044

1.069

0.625

0.666

0.263

CK990538

UNKNOWN

Unknown

1.501

0.008

0.043

1.158

0.590

0.772

0.227

CK991114

UNKNOWN