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Table 4 Position, polymorphism, and recurrence of mutations in the fisher mitochondrial genome.

From: Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore

Genomic position 423 1985 4144 5492 5768 6515 8131 8524 9166 11705 11840 12799 13722 15349 15534 15569 15576 15647 15989
Locus 12s rRNA 16s rRNA ND2 COX1 COX1 COX1 ATP6 ATP6 COX3 tRNA LeuCUN ND5 ND5 ND6 tRNA Thr D-loop D-loop D-loop D-loop D-loop
Locus position 354 891 238 156 432 1179 195 588 550 21 95 1054 371 44 96 131 138 208 550
Nucleotide A/G A/G C/T A/G C/T C/T A/G C/T A/G A/G A/G A/G A/G C/T C/T A/G A/G A/G C/T
Amino Acid - - Leu > Leu Gln > Gln Asp > Asp Phe > Phe Gly > Gly Leu > Leu Ala > Thr - Asn > Ser Ser > Gly Ala > Val - - - - - -
Changes 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 2 1 1 1
Consistency index 1 1 1 1 1 1 1 1 0.5 1 1 1 1 0.5 1 0.5 1 1 1
Homoplasy index 0 0 0 0 0 0 0 0 0.5 0 0 0 0 0.5 0 0.5 0 0 0
Retention index 1 1 1 1 1 1 1 1 0.6667 1 1 1 1 0.833 1 0 1 1 1
Rescaled ci 1 1 1 1 1 1 1 1 0.3333 1 1 1 1 0.417 1 0 1 1 1
  1. Genomic position is measured relative to the 5' end of tRNA-Phe. Locus position is relative to the first nucleotide of the start codon for coding sequences. Locus position for transfer RNAs are relative to the beginning of their 5' end. The location of the D-loop is relative to the end of tRNA-Pro, and substitutions occurring in the D-loop are indicated by bold type. Positions showing evidence of recurrent mutation are highlighted in bold print.